Whole Exome sequencing - SRA

SRX195004: Whole Exome sequencing
1 ILLUMINA (Illumina HiSeq 2000) run: 2.1M spots, 317.8M bases, 148.2Mb downloads

UUID: dbda89ab-7b29-40d6-a824-5d4bb09dd55c

Design: Whole Exome sequencing via in-solution hybrid selection

Submitted by: Broad Institute (BI)

Study: Exome sequencing of (CHS) Southern Han Chinese population HapMap population

Sample: Coriell HG00623

Library:

Name: Catch-169992

Instrument: Illumina HiSeq 2000

Strategy: WXS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Spot descriptor:

1 forward77 reverse

lsid: broadinstitute.org:bsp.prod.sample:3DAU1

project: C459

sample_barcode: 219632.0

target_set: whole_exome_agilent_1.1_refseq_plus_3_boosters

work_request: 31672

Name	Step	Program	Version	Notes
base caller	2012-08-23 23:04:11.0	GAPipeline	RTA1.13.48	Sequencer Application 1.5.15.1

Runs: 1 run, 2.1M spots, 317.8M bases, 148.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR590944	2,090,631	317.8M	148.2Mb	2012-10-14

Supplemental Content

Homo sapiens LETM1 domain containing 1 (LETMD1), transcript variant 1, mRNA
Homo sapiens LETM1 domain containing 1 (LETMD1), transcript variant 1, mRNA
gi|1519473487|ref|NM_015416.5|

Nucleotide
LOC123000053 [Thunnus albacares]
LOC123000053 [Thunnus albacares]
Gene ID:123000053

Gene
cdkl1 cyclin dependent kinase like 1 (CDC2 related kinase) [Danio rerio]
cdkl1 cyclin dependent kinase like 1 (CDC2 related kinase) [Danio rerio]
Gene ID:445316

Gene
dmac2l distal membrane arm assembly component 2 like [Danio rerio]
dmac2l distal membrane arm assembly component 2 like [Danio rerio]
Gene ID:393187

Gene

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SRA